Jeffrey Perkel | Apr 1, 2002 | 4 min read
A. Fahmy, G. Wagner, "TreeDock: A tool for protein docking based on minimizing van der Waals energies," Journal of the American Chemical Society, 124:1241-50, Feb. 20, 2002. "Current understanding of protein-protein and protein-ligand interactions is very limited. This paper describes a new algorithm that allows exploration of the interaction surface very fast and consequently at very fine resolution. The rationale behind the program is to keep the two molecules always in contact. This program