1. Lighting up RNA A novel technique for tagging and following RNA processes in live cells promises to illuminate RNA biology the way green fluorescent protein (GFP) did for the study of proteins. The tagging method consists of short RNA sequences that bind to GFP-like fluorophores and produce a wide range of colors. These RNA-fluorophore complexes can then be fused to RNAs in the cell.
2. G-coupled proteins unveiledResearchers used a series of techniques to reveal the structure of a G-protein coupled receptor, called the beta-2 adrenergic receptor-Gs protein complex, which belongs to a class of receptors that drives cellular responses to hormones and plays a role in sight, smell, and taste. The receptor's crystal structure reveals a specific surface of the protein complex that may modulate receptor signaling.
3 & 4. Cancer drug effectiveness probedResearchers at F1000 are still talking about two papers published in 2004, which solved the mystery of why the anticancer drug gefitinib (brand name Iressa)—which works by latching on to the ATP-binding site of the epidermal growth factor receptor (EGFR)—is effective in only 10 percent of patients with non-small cell lung carcinoma even though EGFR is overexpressed in over 70 percent of patients with that cancer type. It turns out that gefitinib is only effective in those patients with rare mutations that affect the amino acids in the ATP-binding region of EGFR. The findings have since resulted in a more patient-specific use of the drug.
T.J. Lynch et al., “Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib,” N Engl J Med, 350: 2129-39, 2004. Free F1000 evaluation
5. Screening for antimalarial drugsBy screening approximately 1.7 million small molecules for the ability to inhibit the growth of Plasmodium falciparum in red blood cells, researchers not only identified around 6,000 compounds with the potential of antimalarial activity, but they were able to computationally predict the putative mechanisms of actions for some.
D. Plouffe et al., “In silico activity profiling reveals the mechanism of action of antimalarials discovered in a high-throughput screen,” Proc Natl Acad Sci, 105:9059-9064, 2008. Free F1000 evaluation
6. Cryogenic cooling of proteins on hot waterA comparison of X-ray diffraction data of 30 proteins that had either been crystallized at cryogenic temperatures or kept in ambient-temperature solutions revealed that the common process of cryocooling offers a poorer view of protein structural dynamics. The process fails to reveal, for example, variable conformations of amino-acid side chains, suggesting that X-ray diffraction data obtained at room temperature may better suited for revealing the motions and substates of proteins important for catalysis and function.
A high-throughput screening of 12,000 molecules with activity against Plasmodium falciparum and Plasmodium vivax led researchers to identify a new class of compounds known as spiroindolones which are effective antimalarials at nanomolar concentrations. The star of the pack was the synthetic compound NITD609, which affected all stages of the parasites’ life cycles by blocking protein synthesis.
The F1000 Top 7 is a snapshot of the highest ranked articles from a 14-day period on Faculty of 1000 Biochemistry, as calculated on October 21, 2011. Faculty Members evaluate and rate the most important papers in their field. To see the latest rankings, search the database, and read daily evaluations, visit http://f1000.com.