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Genome Digest

Meet the species whose DNA has recently been sequenced.

By | December 19, 2011

Inset: GFAJ-1, Mono LakeNASA, WIKIMEDIA COMMONS

Arsenic-based life
Species: GFAJ-1
Genome Size:  3.5 million base pairs

Interesting fact: The bacteria made waves last year when researcher Felisa Wolfe-Simon and colleagues suggested the bacteria not only lived in arsenic-rich environment, it integrated the potentially toxic element  into its DNA in lieu of phosphorus. Other scientists were highly skeptical. The new genome can’t settle the debate, although the bacteria have fewer arsenic-tolerating genes than those found in garden variety Escherichia coli. Data mining and modeling will likely be needed to sort out what most of the other genes in the genome do.

Genbank: http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHBC01

Enter the monarch

WIKIMEDIA COMMONS, MARCUS OBAL

Species: Danaus plexippus
Genome Size: 273 million base pairs

Interesting fact: The sequence, the first of any butterfly species, may hold clues to how the monarch completes its epic migration from the US to Mexico every year. To manage this Herculean feat, monarchs stock up on belly fat and have increased cold tolerance and longer lifespans. The new genome reveals a panoply of genes that may help the long-distance travelers: circadian clock genes, mechanisms that help them steer, and an expansion in chemical sensors that may be crucial for navigation during their long-haul flights.

S. Zhuan et al., “The monarch butter?y genome yields insights into long-distance migration,” Cell, 147, 1171–1185, November 23, 2011.

Mighty mite

WIKIMEDIA COMMONS, TRANCELIUS

Species: Tetranychus urticae
Genome Size: 90 million base pairs

Interesting fact: The spider mite is a major agricultural pest that devours over 1,100 plant species, including tomatoes, peppers, and maize. In addition to evolving the ability to produce silk, the bug also has genes that help it detoxify plants and eat a large variety of foods—which may help explain its voracious and indiscriminate appetite.

M. Grbic et al., “The genome of Tetranychus urticae reveals herbivorous pest adaptations,” Nature, 2 4 (479), November, 2011.

Resistant Strep
Species: Two mutant strains of Streptococcus pneumoniae
Genome size: 2.1 million base pairs

Interesting fact: Penicillin-resistant strains of Streptococcus pneumoniae have evolved a number of penicillin-binding proteins. But the new genome reveals that those well-known changes may not be the key to resistance. Instead, the wily bacteria have evolved other means of surviving penicillin treatments, including a mutation in an iron metabolizing gene that helps the microbes avoid the toxic build up of reactive oxygen species. The mutation also conferred resistance to an array of other antibiotics.

F. Fani et al., “Whole genome sequencing of penicillin resistant Streptococcus pneumoniae reveals mutations in penicillin-binding proteins and in a putative iron permease,” Genome Biology, 12:R115, 2011.

Homegrown medicine
Species name: Cordyceps militaris
Genome size: 32.2 million base pairs

Interesting fact: The stick-like mushroom, known as pupa grass and used in traditional Chinese medicine, is known for its bug-killing ability. One of the compounds in the fungus is in clinical trials to test its cancer fighting ability. Yet little is known about its reproductive cycle, which limits how easily it can be cultivated. The new genome reveals that different individuals of the species have different sexes, but the fungi can fruit without having sex.

P. Zheng et al., “Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine,” Genome Biology, 12:R116, 2011.

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Avatar of: hwd1

hwd1

Posts: 1

December 19, 2011

The parasitic cilate of fishes, Ichthyophthirius multifiliis, should also be included in this list.Genome Biology 2011, 12: R100(

Avatar of:

Posts: 0

December 19, 2011

The parasitic cilate of fishes, Ichthyophthirius multifiliis, should also be included in this list.Genome Biology 2011, 12: R100(

Avatar of:

Posts: 0

December 19, 2011

The parasitic cilate of fishes, Ichthyophthirius multifiliis, should also be included in this list.Genome Biology 2011, 12: R100(

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