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| 2009 | 2008 | Institution | Strengths | Strengths | Weaknesses | Weaknesses |
|---|---|---|---|---|---|---|
| 1 | 2 | Princeton University, NJ | Peers | Teaching and Mentoring | Job Satisfaction | Pay |
| 2 | 12 | University of California, San Francisco, CA | Job Satisfaction | Peers | Tenure and Promotion | Infrastructure and Environment |
| 3 | - | Albert Einstein College of Medicine of Yeshiva University, Bronx, NY | Research Resources | Management and Policies | Infrastructure and Environment | Pay |
| 4 | - | University of Oklahoma Health Sciences Center, Oklahoma City, OK | Pay | Tenure and Promotion | Infrastructure and Environment | Job Satisfaction |
| 5 | - | Emory University, Atlanta, GA | Peers | Job Satisfaction | Research Resources | Infrastructure and Environment |
| 6 | 1 | J. David Gladstone Institutes, San Francisco, CA | Infrastructure and Environment | Management and Policies | Tenure and Promotion | Peers |
| 7 | 7 | St. Jude Children’s Research Hospital, Memphis, TN | Research Resources | Pay | Tenure and Promotion | Teaching and Mentoring |
| 8 | 15 | Institute for Systems Biology, Seattle, WA | Infrastructure and Environment | Management and Policies | Tenure and Promotion | Job Satisfaction |
| 9 | 8 | The Samuel Roberts Noble Foundation, Ardmore, OK | Research Resources | Management and Policies | Teaching and Mentoring | Tenure and Promotion |
| 10 | - | Mayo Clinic, Rochester, MN | Infrastructure and Environment | Pay | Tenure and Promotion | Teaching and Mentoring |
| 11 | 3 | Trudeau Institute, Saranac Lake, NY | Job Satisfaction | Teaching and Mentoring | Pay | Management and Policies |
| 12 | 46 | University of Pittsburgh, PA | Research Resources | Job Satisfaction | Tenure and Promotion | Management and Policies |
| 13 | - | Fred Hutchinson Cancer Research Center, Seattle, WA | Infrastructure and Environment | Peers | Job Satisfaction | Pay |
| 14 | - | Medical College of Georgia, Augusta, GA | Job Satisfaction | Pay | Infrastructure and Environment | Peers |
| 15 | - | Mount Sinai School of Medicine, New York, NY | Peers | Teaching and Mentoring | Tenure and Promotion | Infrastructure and Environment |
| 16 | 31 | Children’s Hospital Boston, MA | Infrastructure and Environment | Pay | Tenure and Promotion | Job Satisfaction |
| 17 | - | Michigan State University, East Lansing, MI | Job Satisfaction | Tenure and Promotion | Research Resources | Infrastructure and Environment |
| 18 | 42 | University of Michigan, Ann Arbor, MI | Peers | Infrastructure and Environment | Tenure and Promotion | Pay |
| 19 | - | Stanford University, CA | Infrastructure and Environment | Pay | Tenure and Promotion | Management and Policies |
| 20 | - | Wadsworth Center, Albany, NY | Pay | Tenure and Promotion | Peers | Teaching and Mentoring |
| 21 | - | H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL | Infrastructure and Environment | Management and Policies | Tenure and Promotion | Research Resources |
| 22 | 10 | University of Rochester, NY | Job Satisfaction | Teaching and Mentoring | Infrastructure and Environment | Peers |
| 23 | - | California State University Fullerton, CA | Tenure and Promotion | Teaching and Mentoring | Research Resources | Peers |
| 24 | - | University of Utah, Salt Lake City, UT | Tenure and Promotion | Teaching and Mentoring | Pay | Infrastructure and Environment |
| 25 | 36 | University of Texas Southwestern Medical Center, Dallas, TX | Research Resources | Infrastructure and Environment | Tenure and Promotion | Pay |
| 26 | - | Burnham Institute for Medical Research, La Jolla, CA | Infrastructure and Environment | Management and Policies | Tenure and Promotion | Job Satisfaction |
| 27 | - | University of California, Davis, CA | Job Satisfaction | Infrastructure and Environment | Research Resources | Management and Policies |
| 28 | 14 | Massachusetts General Hospital, Boston, MA | Infrastructure and Environment | Research Resources | Tenure and Promotion | Teaching and Mentoring |
| 29 | - | Wayne State University, Detroit, MI | Teaching and Mentoring | Pay | Infrastructure and Environment | Peers |
| 30 | 33 | University of Missouri, Columbia, MO | Teaching and Mentoring | Tenure and Promotion | Peers | Pay |
| 31 | - | The University of Texas at Austin, TX | Job Satisfaction | Infrastructure and Environment | Research Resources | Management and Policies |
| 32 | - | Wake Forest University, Winston-Salem, NC | Management and Policies | Research Resources | Teaching and Mentoring | Peers |
| 33 | 32 | University of California, Los Angeles, CA | Tenure and Promotion | Pay | Research Resources | Infrastructure and Environment |
| 34 | 9 | Vanderbilt University, Nashville, TN | Pay | Infrastructure and Environment | Job Satisfaction | Teaching and Mentoring |
| 35 | - | University of Wisconsin, Madison, WI | Infrastructure and Environment | Peers | Pay | Tenure and Promotion |
| 36 | 44 | Washington University, St. Louis, MO | Teaching and Mentoring | Tenure and Promotion | Pay | Management and Policies |
| 37 | 20 | Indiana University, Bloomington, IN | Research Resources | Job Satisfaction | Management and Policies | Peers |
| 38 | 30 | Duke University, Durham, NC | Peers | Infrastructure and Environment | Pay | Tenure and Promotion |
| 39 | - | Brigham and Women’s Hospital, Boston, MA | Management and Policies | Infrastructure and Environment | Tenure and Promotion | Teaching and Mentoring |
| 40 | - | Fox Chase Cancer Center, Philadelphia, PA | Job Satisfaction | Research Resources | Teaching and Mentoring | Pay |