Microsatellites in plant genomes

Microsatellites are simple repetitive DNA sequences scattered throughout eukaryote genomes. In an Advanced Online Publication from Nature Genetics, Michele Morgante and colleagues report their analysis of the density and distribution of microsatellites in several plant genomes (Nat Genet 2002, DOI:10.1038/ng822).

They compared the genomes of Arabidopsis thaliana, rice (Oryzasativa) soybean (Glycinemax) maize (Zeamays) and wheat (Triticum aestivum), whose haploid genomes vary 50-fold in size. They found an enrichment of microsatellites in transcribed regions, particularly in untranslated regions. They also found that microsatellite frequency is not a function of overall genome size. Microsatellites were more frequent in single- or low-copy DNA fractions than in repetitive DNA.

These results suggest that microsatellites do not originate from repetitive DNA, as was previously proposed.