Histone deacetylases are generally thought of as repressors of gene activity. In the November 15
Chromatin immunoprecipitation (ChIP) techniques, using specific antibodies to sites of acetylation in all four core histones, were applied to screen for genes whose chromatin is hyperacetylated in mutants lacking Hos2 or the related Rpd3 histone deacetylase. Hos2 showed a unique histone specificity and was preferentially required for H3 and H4 deacetylation on some genes. Hos2 deacetylation of H4-K12 was associated with transcriptional activation of the
Hos2 ChIP was combined with microarray hybridization to demonstrate that Hos2 associates with the coding regions of active genes genome-wide. Set3, a factor associated with Hos2, was also required for efficient transcription.