Bugs in the genome

Comparative proteome analysis identifies just 40 genes that are candidates for lateral transfer from bacteria to vertebrates.

Jonathan Weitzman(jonathanweitzman@hotmail.com)
May 17, 2001

There is much speculation about how lateral transfer — the exchange of genes between distantly related species — has shaped the evolution of the human genome. A recent publication estimated that as many as 223 bacterial genes can be found within the human genome sequence. In the May 17 ScienceExpress, Salzberg et al report a careful re-evaluation of the number of putative bacterial-to-vertebrate transfers (BVTs; ScienceXpress 2001, 10.1126/science.1061036). The authors performed careful similarity searches to compare the proteomes from human, fruitfly, nematode worm, yeast, mustard weed, eukaryotic parasites and all completed prokaryotic genomes. They included both the Ensembl and Celera proteome sets (containing 31,780 and 26,544 proteins, respectively). Although their initial analysis revealed similar numbers to earlier estimates, careful statistical examination of the results whittled the final number of BVTs down to 41 (Ensembl) and 46 (Celera). Salzberg et al show that the calculations are highly dependent on...

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