ADVERTISEMENT
ADVERTISEMENT

Not much in common

A comparison of the Celera and Ensembl transcriptomes examines how many predicted genes they have in common.

Jonathan Weitzman(jonathanweitzman@hotmail.com)

The two groups who sequenced the human genome agreed on one thing – that there are fewer genes than everyone originally thought. Both groups estimated around 30,000 genes, using un-precise prediction methods. In the August 24 Cell, John Hogenesch and colleagues, at The Genomics Institute of the Novartis Research Foundation in California, compared the two sets of predicted genes to see how much they agree (Cell 2001, 106:413-415).

They compared the transcriptomes of the Celera (39,114 genes) and Ensembl (29,691 genes) draft sequences with each other, and with the curated Refseq set of genes. First, they showed that the Celera and Ensembl sets contained most of the known genes. But, of the 31,098 potential novel transcripts, 80% were predicted by only one group or the other, but not both. Hogenesch et al. then performed oligonucleotide microarray analysis to examine the expression profile of these potential novel transcripts....

Interested in reading more?

Become a Member of

Receive full access to more than 35 years of archives, as well as TS Digest, digital editions of The Scientist, feature stories, and much more!
Already a member?
ADVERTISEMENT