The Microarray Family Tree

Source: Chart created by Eugene Garfield (egarfield@the-scientist.com), founding editor of The Scientist, and Soren Paris. The Historiograph is a chronological linkage map that visualizes the genealogy of the microarray literature. Starting with the Pat Brown group in 19951 (Also, see Foundations) it progresses to analysis, review and implementation in the ensuing years. The 13 key papers are identified through their citation links. Most have been cited highly in the literature and heavily ref

Aug 25, 2003
The Scientist Staff
Source: Chart created by Eugene Garfield (egarfield@the-scientist.com), founding editor of The Scientist, and Soren Paris.

The Historiograph is a chronological linkage map that visualizes the genealogy of the microarray literature. Starting with the Pat Brown group in 19951 (Also, see Foundations) it progresses to analysis, review and implementation in the ensuing years. The 13 key papers are identified through their citation links. Most have been cited highly in the literature and heavily referenced by a group of roughly 3,000 papers with the word "microarray" appearing in the title.

To see the data from which the chart is drawn, visit:
http://garfield.library.upenn.edu/histcomp/microarray/

For a guide to reading historiograph data, visit:
http://garfield.library.upenn.edu/histcomp/guide.html

References
1. M. Schena, D. Shalon, R.W. Davis, P.O. Brown, "Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray," Science, 270:467-70, Oct. 20, 1995. (cited in 1,661 papers)

2. M. Schena, D. Shalon, R. Heller, A. Chai, P.O. Brown, R.W. Davis, "Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes," Proc Natl Acad Sci, 93:10614-9, Oct. 1, 1996. (cited in 603 papers)

3. J. DeRisi, L. Penland, P.O. Brown, M.L. Bittner, P.S. Meltzer, M. Ray, Y.D. Chen, Y.A. Su, J.M. Trent, "Use of a cDNA microarray to analyse gene expression patterns in human cancer," Nat Genet, 14:457-60, December 1996. (cited in 715 papers)

4. D.J. Lockhart, H.L. Dong, M.C. Byrne, M.T. Follettie, M.V. Gallo, M.S. Chee, M. Mittmann, C.W. Wang, M. Kobayashi, H. Horton, E.L. Brown, "Expression monitoring by hybridization to high-density oligonucleotide arrays," Nat Biotechnol, 14:1675-80, December 1996. (cited in 969 papers)

5. J.L. DeRisi, V.R. Iyer, P.O. Brown, "Exploring the metabolic and genetic control of gene expression on a genomic scale," Science, 278:680-6, Oct. 24, 1997. (cited in 1,290 papers)

6. J. Kononen, L. Bubendorf, A. Kallioniemi, M. Barlund, P. Schraml, S. Leighton, J. Torhorst, M.J. Mihatsch, G. Sauter, O.P. Kallioniemi, "Tissue microarrays for high-throughput molecular profiling of tumor specimens," Nat Med, 4:844-7, July 1998. (cited in 396 papers)

7. M.B. Eisen, P.T. Spellman, P.O. Brown, D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proc Natl Acad Sci, 95:14863-8, Dec. 8, 1998. (cited in 1,532 papers)

8. D.J. Duggan, M. Bittner M, Y.D. Chen, P. Meltzer, J.M. Trent, "Expression profiling using cDNA microarrays," Nat Genet, 21(Suppl):10-4, January 1999. (cited in 489 papers)

9. R.J. Lipshutz, S.P.A. Fodor, T.R. Gingeras, D.J. Lockhart, "High density synthetic oligonucleotide arrays," Nat Genet, 21(Suppl):20-4, January 1999. (cited in 513 papers)

10. P.O. Brown, D. Botstein, "Exploring the new world of the genome with DNA microarrays," Nat Genet, 21(Suppl):33-7, January 1999. (cited in 514 papers)

11. P. Tamayo, D. Slonim, J. Mesirov, Q. Zhu, S. Kitareewan, E. Dmitrovsky, E.S. Lander, T.R. Golub, "Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation," Proc Natl Acad Sci, 96:2907-12, March 16, 1999. (cited in 545 papers)

12. T.R. Golub, D.K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J.P. Mesirov, H. Coller, M.L. Loh, J.R. Downing, M.A. Caligiuri, C.D. Bloomfield, E.S. Lander, "Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring," Science, 286:531-7, Oct. 15, 1999. (cited in 921 papers)

13. A.A. Alizadeh, M.B. Eisen, R.E. Davis, C. Ma, I.S. Lossos, A. Rosenwald, J.G. Boldrick, H. Sabet, T Tran, X. Yu, J.I. Powell, L.M. Yang, G.E. Marti, T. Moore, J. Hudson, L.S. Lu, D.B. Lewis, T. Tibshirani, G. Sherlock, W.C. Chan, T.C. Greiner, D.D. Weisenburger, J.O. Armitage, R. Warnke, R. Levy, W. Wilson, M.R. Grever, J.C. Byrd, D. Botstein, P.O. Brown, L.M. Staudt, "Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling," Nature, 403:503-11, Feb. 3, 2000. (cited in 1,040 papers)


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