A male researcher looks shocked as the Erlenmeyer flask in his hand breaks and the solution leaks out onto the bench top cover.

The Great Flask-tastrophe

Joel Rovnak’s blood drained from his face as his painstakingly-collected sample bled onto the bench.

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As a master’s student at Colorado State University in the late 1980s, I worked on developing a purification protocol for an antiviral enzyme, 2-5A synthetase.This enzyme, induced by interferons, targeted viral RNA with an RNase, and was enriched in immature red blood cells called reticulocytes. 

Collecting large amounts of rabbit reticulocytes took weeks of preparation. On one occasion, I isolated the reticulocytes and suspended the cells in a low-salt lysis buffer in a large glass flask like normal. But then, disaster struck when I set the flask a bit too hard on the benchtop.  

I watched in horror as my red blood cell lysate bled on the white absorbent paper bench coat. Desperate not to lose the last two months of work, I quickly realized that the paper was primarily cellulose, and the next step of my protocol involved running the sample through a cellulose column. I carefully curled up the ends and wrung the lysate into another flask. Although I lost a quarter of my total volume, I figured finishing the rest of the protocol with my recovered sample was worth a shot.

I never told my boss about this harrowing ordeal, but as it turned out that lysate was the best prep of 2-5A synthetase during my graduate program. It had high purity, low protein, and high enzymatic activity—exactly what we were after. 

Looking back, it turned out not to be an epic failure, but it sure felt like one in the moment. Many students get demoralized by setbacks, but in science, things go wrong all the time. As I concluded my career with a greater emphasis on teaching, I realized how important it was to communicate these concepts like perseverance to my students. Even in retirement, the lesson to never give up remains with me from my career. 

Joel Rovnak is now retired and an emeritus professor at Colorado State University. This interview has been edited for length and clarity.

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Solutions for Accelerating Infectious Disease Research

Researchers need a comprehensive toolbox for infectious disease research as they race against the next pandemic.

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Despite their biological simplicity, viruses are powerful pathogens with the demonstrated ability to greatly affect human society. Viral pandemics, such as the most recent COVID-19 pandemic, have the capacity to cause millions of deaths.1 Infectious viral diseases are difficult to study and treat because many viruses present clinically in a similar manner despite having significantly different genomic structures, modes of infection, and transmissibility. Furthermore, viruses can mutate regularly, resulting in novel strains that evade or attenuate the effectiveness of existing vaccines and treatment strategies.2

Stylized rendering of a virus, focusing on virion surface proteins. One large virion is prominent in the foreground while four float in the background.
Scientists need highly specialized biochemical tools to unravel the unique biochemistry, physiology, and pathology of viruses.
Sino Biological

At the same time, the threat posed by viruses is fueling research into how they work and how to combat them. The COVID-19 pandemic provided the impetus for many landmark breakthroughs, ranging from new monoclonal antibody therapeutics to pioneering mRNA vaccine technology. It also spurred researchers to look for approaches with broader tropism, such as pan-coronavirus agents.1  

These initiatives are powered by highly specialized biochemical tools necessary to unravel the unique biochemistry physiology, and pathology of viruses. These tools, sourced from companies like Sino Biological, include recombinant viral proteins, antibodies, antibody pairs, ELISA kits, and cDNA clones,
and support antiviral drug discovery, vaccine research, and diagnostics development. Sino Biological, in particular, offers scientists one of the largest recombinant viral antigen libraries and can also provide custom services to create tools to answer new questions.

Viral outbreak frequency and magnitude is expected to increase as the 21st century continues.1 Scientists rely on companies such as Sino Biological to provide a comprehensive array of solutions as they prepare to meet this challenge.

Learn more about how the latest reagents and tools can accelerate infectious disease research.


What reagents do you use to study viruses in your lab?

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Illustration of four speakers on a panel facing an audience with a blue background behind them.

Spotlighting the Science in Sci-Fi

Carlo Quintanilla talks about the real science behind science fiction at popular culture conventions.

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Carlo Quintanilla, today a science policy analyst at the National Institute of Child Health and Human Development, enjoyed communicating the real-world applications of science to people, but noticed that as he continued in research, he had fewer opportunities to do so. After completing his PhD, a colleague invited him to a science-fiction convention as a speaker. The experience helped Quintanilla find his place as a science communicator. 

What was your first experience as a convention panelist like?

I was nervous because even though I understood the science on the topics I was speaking on, I wasn’t familiar with many science-fiction examples to connect my explanations to. Since I worked with CRISPR in graduate school, I joined a panel on genetic engineering, a common theme in science fiction. It was so exciting. The audience had a lot of different views on genetic engineering, from overall enthusiasm about its potential to questions about access and restrictions. We ran out of time, so I kept talking with people about it afterward. It’s a topic that I’ve approached on many panels since. 

Carlo Quintanilla (far right) speaks at a panel table for a science-fiction conference, joined with three other panelists. He has dark hair and is wearing a dark gray shirt.
Carlo Quintanilla, far right, speaks on panels at science-fiction conventions to talk about genetic engineering and other science topics found in these stories.
Carlo Quintanilla

How can participating in these talks help both scientists and audiences?

Science-fiction enthusiasts get introduced to some of these concepts, but they don’t get the full explanation of what something like genetic engineering or perception in neuroscience is or how it works. These mediums are a great way to spark people’s interest in science, and at these events, there’s a chance to discuss it in more detail. 

For scientists, it’s fun to step away from one’s niche research topic and think about other scientific questions. Engaging with general audiences encourages scientists to think about a scientific concept’s context in history and future implications. Relatedly, it forces scientists to think about ethical aspects of their work that a researcher focused on discovery may not be considering. Since findings don’t exist in a vacuum, that can be important to think about in advance. This can also help researchers think about the narrative of a project.

This interview has been edited for length and clarity.

Close up of ultraviolet light box during the preparation of an agarose electrophoresis gel used in DNA separation.

Automate and Illuminate Bioimaging Assays

Intuitive and automated chemiluminescence detection empowers scientists with accessible image acquisition and analyses.

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The UVP ChemSolo Auto from Analytik Jena
New detection technologies are essential tools for life science researchers, enabling a wide range of sensitive and adaptable biochemical assays.
Analytik Jena

Since the 1960s, researchers have turned to chemiluminescence-based techniques for biologically relevant assays with high sensitivity and broad adaptability.1 The ease and dependability of such techniques has contributed to their widespread adoption across applications, however conventional detection methods often rely on manual imaging approaches, which can be time consuming, tedious, and prone to user error. Novel detection tools that streamline image acquisition and analysis promise to progress a multitude of robust methods into the automated assay realm.2

Common chemiluminescence applications include assays that use chemical dyes to stain and illuminate DNA or proteins, such as gel electrophoresis-based methods and immunoblotting analyses. After a chemical reaction excites electrons in the dye, the electrons return to ground state and emit photons of light from the sample. Scientists then detect chemiluminescence through sensitive cameras that capture different light wavelengths.1,2

New detection technologies, such as the UVP ChemSolo Auto from Analytik Jena, are essential tools for life science researchers. The UVP ChemSolo Auto is a versatile bioimaging system designed to streamline a variety of applications, including DNA and protein gel analysis, western blotting, and even colony counting. With a user-friendly interface, precise control, and rapid imaging capabilities, it allows researchers to obtain high-quality results with ease and confidence. The intuitive and fully automated modular system empowers scientists with image acquisition and analyses accessible from their computer screens. From auto and manual image capture modes to customizable exposure settings and image saving options, researchers can achieve accurate detection and quantification, and reliable and reproducible results.

Learn more about automated chemiluminescent detection.


What membranes and reagents do you prefer for chemiluminescence?

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A person works with their sourdough starter in the kitchen.

Bakers Rise Up to Tackle Sourdough Mysteries

Donated sourdough starters helped researchers uncover the factors that influence microbial communities in these living cultures.

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modified from © istock.com, Inna Miller, Pavel Naumov, Rudzhan Nagiev; designed by Erin Lemieux

Sourdough bread has a longstanding history with humans. People love sourdough’s tangy flavor, but the microbes within the living starters that create these delicious loaves remain a mystery. To find answers, Rob Dunn, an ecologist and evolutionary biologist at North Carolina State University, launched the citizen science project The Science of Sourdough in 2016. Dunn’s group partnered with other researchers to study how a starter’s geographical location influenced microbial species.

“We did not anticipate how much interest there would be,” recalled Lauren Nichols, who worked in Dunn’s group as a lab manager and is now a data visualization analyst at Duke University. More than 500 people worldwide donated their starters, some spanning decades in age—practically family heirlooms!

They used 16S ribosomal RNA sequencing and identified over 70 yeast species, along with the presence of lactic acid- and acetic acid-producing bacteria.1 To their surprise, they found that most starters contained similar bacteria and yeast species, despite their distinct geographic origins. The findings raised more questions about how starters were made and maintained. 

This prompted them to explore factors such as aroma, flour type, time to rise, and height of rise. “We’ve engaged with people around the world making wild sourdough,” said Dunn. Home bakers experimented with different flours (white or whole wheat) and locations (indoor or outdoor), reporting their observations over a couple of weeks. From 40 starters, they found distinct growth phases correlated with early shifts in bacterial diversity, with lactic acid-producing bacteria lowering pH in the first few days.2 The types of flour also influenced the bacterial species present, affecting the height and sourness of the starter. 

With thousands of more observations to analyze, Nichols said, “We might see things that we didn’t expect, which could give us clues as to where we might focus our energy on future projects.” 

Want to submit your own citizen science project? 

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  1. Landis EA, et al. Elife. 2021;10:e61644.
  2. McKenney EA, et al. PeerJ. 2023;11:e16163.
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Streamlining NGS Sample Preparation with Automation 

Cutting-edge microfluidics enables full automation of NGS protocols.

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Next-generation sequencing (NGS) is an exquisitely sensitive technique for bulk parallel sequencing of genetic material. The speed and overall efficiency of NGS workflows enable high-throughput processing and cost reduction. Sample preparation is critical for achieving reliable and reproducible downstream extraction results. Consequently, researchers must take great care during this critical step, which can often be complicated and cumbersome.1 

Image of a laboratory next generation sequencing automated instrument in white, blue, and black, on a lab bench background.
INTEGRA Biosciences’ MIRO CANVAS microfluidics platform eases the challenges of manual sample preparation for next-generation sequencing.
Integra

The ability to navigate the challenges of manual NGS sample preparation can make or break an experiment. For example, preparing NGS libraries, performing hybridizations, and following protocols for sample processing, target enrichment and long-read sequencing often requires troubleshooting that can further delay experiments and confound results. There are many steps involved, including mixing, running the PCR and cleaning up beads, and the overall process is labor and resource intensive, increasing the chances of human error. Researchers seek alternatives to manual NGS sample preparation that can simplify workflows, save time, minimize reagent use, reduce costs, and improve experimental flexibility. Automated devices are game changers, and are increasingly becoming laboratory equipment staples.

INTEGRA Biosciences’ MIRO CANVAS instrument is a small footprint digital microfluidics platform that provides researchers with an affordable, gentle, and completely automated sample preparation solution. It also minimizes reagent use, as all liquid handling is achieved using one disposable cartridge. The MIRO CANVAS transforms time-consuming, multi-step, error-prone manual sample preparation into a fully automated, straightforward process. The instrument significantly reduces hands-on time to several minutes, freeing up scientists to engage in other tasks. 

Learn more about devices for NGS sample preparation. 

 

What is the biggest challenge you encounter when preparing NGS samples?

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Rewilding Urban Spaces Boosts Immune Health

From daycares to indoor gardens, scientists are bringing nature back into cities to improve immune regulation.

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© istock.com, onurdongel

          Photo of Aki Sinkkonen on a ferry.
Aki Sinkkonen, an ecologist at the Natural Resources Institute Finland, studies the influence of urban ecosystems on immunoregulation.
Marja Roslund

A decade ago, Aki Sinkkonen, an ecologist at the Natural Resources Institute Finland, went on a wilderness hike with an immunologist colleague. Watching their children swim in a muddy lake, surrounded by nature’s microbial medley, they discussed the biodiversity hypothesis, which posits that rising rates of immune-mediated diseases may result from reduced contact with nature.1 With few studies to turn to, Sinkkonen shifted his research to explore the impact that urban biodiversity interventions in daycares and homes have on human immune regulation and skin microbiota.

How did daycare modifications impact children’s immune responses?

The immune system develops in childhood, so we studied environments that children are exposed to. Typical daycare playgrounds often lack natural elements like vegetation and dirt. We found that adding microbially-rich materials to playgrounds can impact immunoregulation.2 After 28 days, children in these enhanced playgrounds showed increased skin and gut microbiota diversity, circulating immune suppressive cytokine levels, and regulatory T cells.

What are some prophylactic practices that you’ve explored in offices and homes?

Growing evidence suggests that microbially-rich home environments can improve health, so we conducted a small, placebo-controlled, double-blinded indoor gardening intervention.3 City-dwelling adults who handled microbially-rich soil daily showed diversified skin microbiota and elevated anti-inflammatory cytokine IL-10 levels after two weeks. We also investigated if air-circulating green walls could increase exposure to environmental microbiota.4 We found that office greening may improve the skin microbiome diversity and reduce proinflammatory cytokine activities, though further research is needed.

What experiments are needed to collect more conclusive evidence?

Our intervention studies point to immune modulation from environmental microbiota exposure, but to study disease incidence, we need long-term human observations. We are currently conducting several longitudinal, double-blinded studies on disease incidence and changes in urban environments.

A person works with their sourdough starter in the kitchen.

Science Crossword Puzzle

Put on your thinking cap, and take on this fun challenge.

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modified from © istock.com, Inna Miller, Pavel Naumov, Rudzhan Nagiev; designed by Erin Lemieux

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