Cracking CRISPR

Using the bacterium Streptococcus thermophilis, a team led by Philippe Horvath at the Danish food ingredient company Danisco, integrated bacteriophage sequences into "clustered regularly interspersed short palindromic repeat" (CRISPR) regions to generate phage-resistant bacterial strains. "They directly confirmed the prediction," says Eugene Koonin, a computational biologist at the US National Center for Biotechnology Information.

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R. Barrangou et al., "CRISPR provides acquired resistance against viruses in prokaryotes," Science, 315:1709–12, 2007. (Cited in 66 papers)

Using the bacterium Streptococcus thermophilis, a team led by Philippe Horvath at the Danish food ingredient company Danisco, integrated bacteriophage sequences into "clustered regularly interspersed short palindromic repeat" (CRISPR) regions to generate phage-resistant bacterial strains. "They directly confirmed the prediction," says Eugene Koonin, a computational biologist at the US National Center for Biotechnology Information.

Koonin, together with John van der Oost at Wageningen University in the Netherlands, reconstituted the CRISPR phenomenon in Escherichia coli, and showed that a complex of CRISPR-associated (Cas) proteins cleaves a CRISPR RNA precursor, leaving only the virus-derived sequence, which then interferes with phage proliferation (Science, 5891:960–4, 2008).

Danisco is exploiting the CRISPR mechanism to improve the antiviral immunity of the bacterial cultures used to make yogurt and cheese. "We are trying to vaccinate the bacteria against ...

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