Mass Phenotyping

Gels allow researchers to analyze proteins and gene chips let them analyze gene expression. What more could they possibly need? How about a tool to examine what's happening on the cellular level? A new technology called Phenotype MicroArrays™ (PM) offers just that. Unlike gels and gene chips, PM technology, developed by Hayward, Calif.-based Biolog Inc., enables scientists to identify changes in cellular phenotype. "The data we get is higher-level with PM technology because we know that th

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The new technology measures phenotypic changes using cell respiration as a universal reporter. Researchers can use PMs to define the effects of gene knockouts or drug exposure on various cellular pathways. Identifying cellular phenotypes can also help scientists understand the pathology of disease. Currently, PMs can test the phenotypes of bacterial and fungal cells, but Biolog scientists have begun development of PMs for human cells as well. The company ultimately intends to offer researchers the ability to scan 2,000 different phenotypes with these arrays.

Bochner published results on the reliability of the PM technology in the July issue of Genome Research.1 In one example cited in the study he tested a strain of Escherichia coli that had its xylose catabolic gene inactivated. Placing these cells on a PM designed to test carbon catabolic functions, the xylose test well failed to turn purple, as expected. However, so did the wells for ...

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