Proteomic profiling

By Jef Akst Proteomic profiling Courtesy of Gerard Drewes The paper: M. Bantscheff et al., “Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors,” Nat Biotech, 25:1035–44, 2007. (Cited in 69 papers) The finding: Gerard Drewes and his colleagues at Cellzome, a German biotech company, created nonspecifically binding compounds called “kinobeads” to

Written byJef Akst
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The paper:

M. Bantscheff et al., “Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors,” Nat Biotech, 25:1035–44, 2007. (Cited in 69 papers)

The finding:

Gerard Drewes and his colleagues at Cellzome, a German biotech company, created nonspecifically binding compounds called “kinobeads” to screen kinase inhibitor drug candidates in living human cells. By quantifying the proteins gathered by the kinobeads after exposure to known oncogenic drugs, they determined the drugs’ affinities to hundreds of proteins and discovered several previously unknown drug targets.

The advantage:

Unlike in vitro drug testing techniques, which can alter protein shape, this method allows researchers to “look at those proteins from a native context,” says Harvard Medical School’s Nathanael Gray.

The implication:

The study was the first to recognize a non-kinase target of the cancer drug imatinib, which raises the possibility of unwanted drug-drug interactions or off-target effects, Drewes says. This study “illustrated ...

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Meet the Author

  • Jef (an unusual nickname for Jennifer) got her master’s degree from Indiana University in April 2009 studying the mating behavior of seahorses. After four years of diving off the Gulf Coast of Tampa and performing behavioral experiments at the Tennessee Aquarium in Chattanooga, she left research to pursue a career in science writing. As The Scientist's managing editor, Jef edited features and oversaw the production of the TS Digest and quarterly print magazine. In 2022, her feature on uterus transplantation earned first place in the trade category of the Awards for Excellence in Health Care Journalism. She is a member of the National Association of Science Writers.

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