Speed-Reading the Genome

Reading genomes is a messy business. Even the terminology—like "shotgun"—evokes images of inelegant science. But Woburn, Mass.-based US Genomics plans to change that. Inventor Eugene Chan based the GeneEngine™ on the same mechanisms cells use to read DNA. He designed a system in which DNA is first linearized and then threaded through a nanofluidic chip at high speeds. Before the analysis, the DNA sample is treated with a set of fluorescently labeled tetramers that cover the thr

Written byJim Kling
| 3 min read

Register for free to listen to this article
Listen with Speechify
0:00
3:00
Share

The result is a device with the potential to analyze a single, long strand of DNA. That means far less handling of DNA and therefore fewer problems with contamination and loss. Chan claims that it is also faster than existing systems; it analyzes 10 to 30 million base pairs per second. And best of all, he says, the system may not require polymerase chain reaction (PCR).

The US Patent and Trademark Office recently awarded US Genomics patent No. 6,355,420, "Methods and products for analyzing polymers," to cover its GeneEngine technology. Though the system isn't commercially available yet, the company has entered into collaborations with the Wellcome Trust Sanger Institute and Pui-Yan Kwok, dermatology professor at the University of California, San Francisco, to validate its claims and enhance further development.

The GeneEngine is a potentially powerful tool for haplotype analysis, says Kwok. In haplotype analysis, scientists correlate inheritance of a disease ...

Interested in reading more?

Become a Member of

The Scientist Logo
Receive full access to digital editions of The Scientist, as well as TS Digest, feature stories, more than 35 years of archives, and much more!
Already a member? Login Here

Meet the Author

Published In

Share
December digest cover image of a wooden sculpture comprised of multiple wooden neurons that form a seahorse.
December 2025, Issue 1

Wooden Neurons: An Artistic Vision of the Brain

A neurobiologist, who loves the morphology of cells, turns these shapes into works of art made from wood.

View this Issue
Stacks of cell culture dishes, plates, and flasks with pink cell culture medium on a white background.

Driving Innovation with Cell Culture Essentials

Merck
Stacks of cell culture dishes, plates, and flasks with pink cell culture medium on a white background.

Driving Innovation with Cell Culture Essentials

MilliporeSigma purple logo
Abstract wireframe sphere with colorful dots and connecting lines representing the complex cellular and molecular interactions within the tumor microenvironment.

Exploring the Inflammatory Tumor Microenvironment 

Cellecta logo
An image of a DNA sequencing spectrum with a radial blur filter applied.

A Comprehensive Guide to Next-Generation Sequencing

Integra Logo

Products

brandtech logo

BRANDTECH® Scientific Announces Strategic Partnership with Copia Scientific to Strengthen Sales and Service of the BRAND® Liquid Handling Station (LHS) 

Top Innovations 2026 Contest Image

Enter Our 2026 Top Innovations Contest

Biotium Logo

Biotium Expands Tyramide Signal Amplification Portfolio with Brighter and More Stable Dyes for Enhanced Spatial Imaging

Labvantage Logo

LabVantage Solutions Awarded $22.3 Million U.S Customs and Border Protection Contract to Deliver Next-Generation Forensic LIMS