Carving Out a Niche for Muscle Stem Cells with 3D Culture

Skeletal muscle organoids help scientists bypass bottlenecks in satellite cell production for muscle regeneration research.

Written byDeanna MacNeil, PhD
| 4 min read
Cross-section of striated skeletal muscle under the microscope
Register for free to listen to this article
Listen with Speechify
0:00
4:00
Share

Skeletal muscle has remarkable regenerative capacity thanks to satellite cells, a special stem cell type that self-renews and creates progenitor cells, which fuse and engraft into muscle fibers.1 These characteristics contribute to the therapeutic potential of satellite cells in degenerative and disease states that impede muscle regeneration. However, when scientists isolate satellite cells from the skeletal muscle niche for 2D cell culture, they begin to fight a losing battle against stem cell differentiation. “They basically spontaneously differentiate into myoblasts. They are no longer muscle stem cells, they are what we call committed muscle progenitors,” said Lee Rubin, a neuroscientist at Harvard University who studies central nervous system aging and skeletal muscle disorders. “Myoblasts certainly can make muscle, but what they cannot do is reoccupy their niche … This is a big problem for the muscle field.”

Lee Rubin, PhD, Harvard University

Lee Rubin, a neuroscientist at Harvard University, uses organoids to study central nervous system aging and skeletal muscle disorders.

Kris Snibbe, Harvard University

In work published in Nature Biotechnology, Rubin and his research group turned to 3D cell culture to take on the problem of generating sufficient satellite cells for regenerative therapies.2 Spearheaded by cell biologist Feodor Price, lead author of the study and principal scientist in Rubin’s laboratory, the researchers created progenitor-derived skeletal muscle organoid (SkMO) models to recapitulate the satellite cell niche in vitro. Within this SkMO niche, they found, isolated, and expanded functional satellite-like cells, which they named in vitro-derived satellite cells (idSCs). These new stem cells were distinct from naturally occurring satellite cells and capable of repairing damaged or diseased muscle in mouse models of degeneration.

Researchers typically create organoid models for other biological systems with pluripotent stem cells, but the Harvard team began with readily accessible myoblasts, which satellite cells differentiate into in vivo and in 2D culture. Under specific 3D culture conditions, the myoblasts self-assembled into SkMO and differentiated further into other mature muscle cell types. Price also identified cells that lacked the myoblast marker myoblast determination protein 1 (MyoD) but expressed the satellite cell marker paired box 7 (Pax7). “What he found was that, in the niche created in the organoid, satellite cells that were not there to start with appeared. In other words, that the myoblasts had de-differentiated into more of a satellite-like cell,” Rubin explained.

A skeletal muscle organoid stained with blue (cell nuclei), red (myosin heavy chain), and green (Pax7).

Feodor Price grew human skeletal muscle organoids from myoblasts, which differentiated into mature muscle cells and de-differentiated into expandable and novel satellite-like cells. In this microscopy image of a 15-day old skeletal muscle organoid, taken with a Nikon Eclipse Ti, cell nuclei are stained in blue, myosin heavy chain in red, and Pax7 in green (100μm scale bar).

The Rubin Lab

These newly identified idSCs were genetically and epigenetically distinct from satellite cells and expandable in 3D culture, which allowed the scientists to generate millions of cells and overcome the roadblock of in vitro satellite cell production. “It's an exciting paper because the culture of muscle stem cells results in their loss of engrafting potential,” said Shahragim Tajbakhsh, a stem cell biologist at the Pasteur Institute who investigates skeletal muscle development and regeneration, and who was not involved in the study. “The major output of this paper is that they've come up with a protocol that circumvents that.”

Continue reading below...

Like this story? Sign up for FREE Cell Biology updates:

Latest science news storiesTopic-tailored resources and eventsCustomized newsletter content
Subscribe

In addition to producing large numbers of satellite-like cells, Price and Rubin transplanted the cells into mouse models with damaged muscle and demonstrated that idSC are functionally better than myoblasts at repopulating the stem cell niche, and comparable to if not better than satellite cells freshly isolated from muscle. “They have come up with a protocol that is not completely matching the in vivo state but has a reasonable and very exciting signature that is matching that in vivo state,” said Tajbakhsh. “When they compare it to myoblasts and when they compare it to bona fide in vivo derived muscle stem cells, they've probably reached the closest protocol to the in vivo state that I have seen to date.”

Related Topics

Meet the Author

  • Deanna MacNeil, PhD headshot

    Deanna earned their PhD from McGill University in 2020, studying the cellular biology of aging and cancer. In addition to a passion for telomere research, Deanna has a multidisciplinary academic background in biochemistry and a professional background in medical writing, specializing in instructional design and gamification for scientific knowledge translation. They first joined The Scientist's Creative Services team part time as an intern and then full time as an assistant science editor. Deanna is currently an associate science editor, applying their science communication enthusiasm and SEO skillset across a range of written and multimedia pieces, including supervising content creation and editing of The Scientist's Brush Up Summaries.

    View Full Profile
Share
You might also be interested in...
Loading Next Article...
You might also be interested in...
Loading Next Article...
Illustration of a developing fetus surrounded by a clear fluid with a subtle yellow tinge, representing amniotic fluid.
January 2026

What Is the Amniotic Fluid Composed of?

The liquid world of fetal development provides a rich source of nutrition and protection tailored to meet the needs of the growing fetus.

View this Issue
Human-Relevant In Vitro Models Enable Predictive Drug Discovery

Advancing Drug Discovery with Complex Human In Vitro Models

Stemcell Technologies
Redefining Immunology Through Advanced Technologies

Redefining Immunology Through Advanced Technologies

Ensuring Regulatory Compliance in AAV Manufacturing with Analytical Ultracentrifugation

Ensuring Regulatory Compliance in AAV Manufacturing with Analytical Ultracentrifugation

Beckman Coulter Logo
Conceptual multicolored vector image of cancer research, depicting various biomedical approaches to cancer therapy

Maximizing Cancer Research Model Systems

bioxcell

Products

Sino Biological Logo

Sino Biological Pioneers Life Sciences Innovation with High-Quality Bioreagents on Inside Business Today with Bill and Guiliana Rancic

Sino Biological Logo

Sino Biological Expands Research Reagent Portfolio to Support Global Nipah Virus Vaccine and Diagnostic Development

Beckman Coulter

Beckman Coulter Life Sciences Partners with Automata to Accelerate AI-Ready Laboratory Automation

Refeyn logo

Refeyn named in the Sunday Times 100 Tech list of the UK’s fastest-growing technology companies