Standardizing Gut Microbiome Studies

NIST has spent years developing a human fecal reference material.

Written byAparna Nathan, PhD
| 2 min read
cartoon gut microbes
Register for free to listen to this article
Listen with Speechify
0:00
2:00
Share

Researchers studying the human gut microbiome can measure vastly different levels of microbial genetic material, proteins, and lipids because of technical or methodological differences. To make microbiome studies more standardized and reproducible, NIST is making a stable, homogeneous human stool reference material.

tktktktk
Modified from © Istock.com, drogatnev, ai_yoshi, mountainbrothers, fairywong
NIST hired a contractor to recruit two groups of people to provide the stool samples. For their current reference material: vegetarians and omnivores (1). Each participant provided stool samples over the course of multiple days; the samples were frozen and stored. They also kept track of their food intake so that researchers knew what types of molecules to expect in the stool (2). The frozen stool samples were thawed, and each groups samples blended together with some water to dilute the mixture (3). Researchers poured the mixture into one milliliter tubes. The blending process produces homogeneous contents, so each tube containeds the same mixture of molecules and other bacterial products. The tubes were frozen and packaged in boxes that each contained a few tubes from each group (4).

Illustration shows how researchers can use NIST reference samples in their metabolomics experiments.
MODIFIED FROM © ISTOCK.COM, SENSVECTOR, DROGATNEV, AI_YOSHI, MOUNTAINBROTHERS
Soon, researchers will be able to purchase these reference materials from NIST. This will allow scientists to standardize their measurements across time, lab equipment, and methodologies. When each lab runs an experiment, they can include one of the NIST reference materials—either vegetarian or omnivore—in their experiments alongside their own collected stool samples as a baseline for other measurements (5,7).

Different teams may measure the same molecule at different levels due to technical discrepancies. Including the same NIST reference material provides a common point of reference for comparing results across tests (6,8).

Read the full story.

Related Topics

Meet the Author

  • Aparna Nathan, PhD

    Aparna is a freelance science writer with a PhD in bioinformatics and genomics from Harvard University. She uses her multidisciplinary training to find both the cutting-edge science and the human stories in everything from genetic testing to space expeditions. She was a 2021 AAAS Mass Media Fellow at the Philadelphia Inquirer. Her writing has also appeared in Popular Science, PBS NOVA, and The Open Notebook.

    View Full Profile
Share
You might also be interested in...
Loading Next Article...
You might also be interested in...
Loading Next Article...
July Digest 2025
July 2025, Issue 1

What Causes an Earworm?

Memory-enhancing neural networks may also drive involuntary musical loops in the brain.

View this Issue
Explore synthetic DNA’s many applications in cancer research

Weaving the Fabric of Cancer Research with Synthetic DNA

Twist Bio 
Illustrated plasmids in bright fluorescent colors

Enhancing Elution of Plasmid DNA

cytiva logo
An illustration of green lentiviral particles.

Maximizing Lentivirus Recovery

cytiva logo
Explore new strategies for improving plasmid DNA manufacturing workflows.

Overcoming Obstacles in Plasmid DNA Manufacturing

cytiva logo

Products

shiftbioscience

Shift Bioscience proposes improved ranking system for virtual cell models to accelerate gene target discovery

brandtechscientific-logo

BRANDTECH Scientific Launches New Website for VACUU·LAN® Lab Vacuum Systems

The Scientist Placeholder Image

Waters Enhances Alliance iS HPLC System Software, Setting a New Standard for End-to-End Traceability and Data Integrity 

The Scientist Placeholder Image

Agilent Unveils the Next Generation in LC-Mass Detection: The InfinityLab Pro iQ Series