Discovering metabolic loci

Comparative genomics can uncover hidden metabolic potential and biosynthetic pathways.

| 1 min read

Register for free to listen to this article
Listen with Speechify
0:00
1:00
Share

Bacterial genomes often contain clusters of genes involved in secondary metabolite biosynthesis, that are not expressed until induction by specific chemical or physical stimuli. In an Advanced Online Publication in Nature Biotechnology, Emmanuel Zazopoulus and colleagues describe a high-throughput genome scanning method to detect such clusters in bacterial genomes (Nature Biotechnology, DOI:10.1038/nbt784, 20 January 2003).

Genome sequence tags (GSTs) were screened against a database of microbial gene clusters of metabolic loci to rapidly identify novel metabolic loci. Zazopoulus et al. used the genome scanning approach to screen actinomycetes strains for genes involved in the biosynthesis of enedyine, a class of anti-tumor antibiotics. They identified a conserved cluster of five genes — the putative "warhead gene cassette" — including a polyketide synthase gene that may be involved in the formation of the reactive chromophore ring structures found in all enediynes.

Interested in reading more?

Become a Member of

The Scientist Logo
Receive full access to more than 35 years of archives, as well as TS Digest, digital editions of The Scientist, feature stories, and much more!
Already a member? Login Here

Meet the Author

  • Jonathan Weitzman

    This person does not yet have a bio.
Share
A greyscale image of cells dividing.
March 2025, Issue 1

How Do Embryos Know How Fast to Develop

In mammals, intracellular clocks begin to tick within days of fertilization.

View this Issue
Discover the history, mechanics, and potential of PCR.

Become a PCR Pro

Integra Logo
3D rendered cross section of influenza viruses, showing surface proteins on the outside and single stranded RNA inside the virus

Genetic Insights Break Infectious Pathogen Barriers

Thermo Fisher Logo
A photo of sample storage boxes in an ultra-low temperature freezer.

Navigating Cold Storage Solutions

PHCbi logo 
The Immunology of the Brain

The Immunology of the Brain

Products

Sapio Sciences

Sapio Sciences Makes AI-Native Drug Discovery Seamless with NVIDIA BioNeMo

DeNovix Logo

New DeNovix Helium Nano Volume Spectrophotometer

Olink Logo

Olink® Reveal: Accessible NGS-based proteomics for every lab

Olink logo
Zymo Logo

Zymo Research Launches the Quick-16S™ Full-Length Library Prep Kit