Infographic: How Prime Editing Works

Prime editing is one of the most promising forms of genome editing because it uses only single-stranded DNA breaks.

Black and white portrait of Ida Emilie Steinmark, PhD
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The prime editing machinery comprises a prime editing guide RNA (pegRNA) and a Cas9 nickase enzyme fused to a reverse transcriptase.

The prime editing machinery comprises a prime editing guide RNA (pegRNA) and a Cas9 nickase enzyme fused to a reverse transcriptase.
(Left) The pegRNA binds to a matching sequence on the target DNA strand.(Right) The Cas9 nickase cuts the unbound complementary strand, creating a flap.
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The pegRNA binds to a matching sequence on the target DNA strand.

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The Cas9 nickase cuts the unbound complementary strand, creating a flap.

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The dangling DNA flap binds to a matching sequence on the other end of the pegRNA.

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The reverse transcriptase extends the flap by filling in the desired insertion sequence from the template next to the binding site.


The edited flap competes with and displaces the flanking nucleotide sequence (right), which is ultimately removed by the cell. The opposite strand is nicked and repaired to match
the newly edited flap, completing the edit.
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The edited flap competes with and displaces the flanking nucleotide sequence (right), which is ultimately removed by the cell.

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The opposite strand is nicked and repaired to match the newly edited flap, completing the edit.

modified from © istock.com, ttsz; designed by erin lemieux
  1. Anzalone AV, et al. Search-and-replace genome editing without double-strand breaks or donor DNA. Nature. 2019;576(7785):149-157.

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Meet the Author

  • Black and white portrait of Ida Emilie Steinmark, PhD

    Ida Emilie Steinmark, PhD

    Emilie is an assistant editor at the Scientist. She has a background in chemistry and biophysics, and she has previously written for the Guardian, Scientific American and STAT, among others.

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