May 2008

Crossing Arabidopsis Strains Kirsten Bomblies, a postdoc at the Max Planck Institute for Developmental Biology, Tübingen, Germany, conducted hundreds of intraspecies crosses of Arabidopsis thaliana. Approximately 2% of these hybrids develop varying degrees of necrosis that appears to be caused by gene interactions that produce an autoimmune-like response. (Images originally published in PLoS Biol 5(9): e236, 2007) var FO = { movie:"http://images.the-scientist

What do you do when you know your funding will soon run out?

Losing your lab In 2007, more than 4,000 NIH-funded researchers were denied grant renewals. For some,that means they have to close upshop. By Alison McCook Article Extras Web Only: Weaned, via Whitaker Other labs lost For Alan Schneyer, everything changed in June, 2006. The scientist was running a lab in the reproductive endocrinology department at Massachusetts General Hospital (MGH) in Boston, and had recently logged some interesting result

Other labs lost By Alison McCook Article Extras Losing your lab Web Only: Weaned, via Whitaker When Peter Cariani was a teenager, both of his parents died. So as an adult starting his career, "I had a fairly fatalistic view towards life," says the scientist, now 51. "I never expected to make much money, but I thought there would be a niche for me that was sustainable and would help me provide for my family and put my kids through college." As

Swiss Structures Justin Hession Photography /1 in September 2006, it led to a complete rethinking of ABC transporter structure - and the retraction of five earlier papers on related structures.2 (A software error had led Geoffrey Chang, the young US researcher who had published those earlier articles, to inadvertently mistake the handedness of the molecule.) Locher, a steely character with short dark hair and rimless glasses, suggests that Chang's blunder

An abattoir saves the day By Stephen Pincock Article Extras Swiss Structures When Timm Maier arrived at Nenad Ban's lab at ETH Zurich in early 2004, he was looking for a project that would push him to his limits. Not long before, ETH's Simon Jenni had obtained well-diffracting crystals of fungal fatty acid synthase, so Maier decided to go after its mammalian analogue. Justin Hession Photography /www.justinhession.ch Nenad Ban (left) and T

During replication, DNA polymerases are positioned on each strand of DNA. Using a microscope slide as an anchor, we tethered DNA to a bead and stretched it with a flow of solution. We tracked how the position of the bead changed as the replication machinery went to work. Every time a lagging strand loop is formed in the DNA, the length of the strand is reduced (middle panel). Upon release of this loop, the DNA length suddenly increases, visible as an abrupt motion of the

Researchers studying viral entry have not been able to visualize exactly how a viral particle fuses with a cell. We've developed a method whereby the different stages of fusion can be detected by the release of different fluorescent tags. We inserted blue dye into the viral membrane so that at the moment fusion occurs, these dye molecules escape into an artificial membrane sheet, throwing off a bright burst of green ligh

A Singular Focus © Wolfgang Kumm / Corbis A physicist looks at photosynthesis, replication, and viral entry, molecule by molecule. By Antoine van Oijen Article Extras 1 turned out to be an important one for me. It caught the attention of many researchers in the community, and was cited more than 200 times. More importantly it gave me a little bit of insight into biological systems. Even though I had limited interaction with biolog

Researchers who want to develop better solar panels drool over how efficiently chloroplast proteins convert light into energy. We froze the two rings of the photon-capturing machinery down to 1°K to keep it stable. We then watched as the energy hops between molecules of the loosely packed ring (dark orange), but when it's excited further, the energy jumps to the tightly packed ring of 18 pigments (light orange), and is smeared across them. Now the energy is everywhere at once.

The replication stutter During replication, DNA polymerases are positioned on each strand of DNA . Using a microscope slide as an anchor, we tethered DNA to a bead and stretched it with a flow of solution. We tracked how the position of the bead changed as the replication machinery went to work. Every time a lagging strand loop is formed in the DNA , the length of the strand is reduced (middle panel). Upon release of this loop, the DNA length suddenly increases, visible as an

James Collins has shifted gears from medical engineering to gene switches, and won a MacArthur grant along the way.

Illustration of glycoproteins present on the highly glycosylated cell surface. These proteins, often specific to diseases, can be shed or secreted into the blood stream and so are ideal targets for biomarker discovery. Credit: courtesy of Ralph Schiess and Reto Ossola, Swiss Federal Institute of Technology" />Illustration of glycoproteins present on the highly glycosylated cell surface. These

Slideshow: Dandruff genomics The images behind Proctor & Gamble's Thomas Dawson and his goal to put more biology in every bottle of shampoo courtesy of P&G Beauty var FO = { movie:"http://images.the-scientist.com/supplementary/flash/54595/54595.swf", width:"520", height:"600", majorversion:"8", build:"0", xi:"false"}; UFO.create(FO, "ufoDemo"); Please download the Adobe Flash Player to view this content: Related Articles: Dandruff G

Isolating and detecting glycosylated proteins

Researcher: Martin Larsen, research associate professor, University of Southern Denmark, Odense Related Articles Sweet Attachments Off-the-shelf glycoprotein detection methods Sugar ID Polyclonal Needle in a haystack Classic chemistry Project: Discovery of sialic acid (SA)-containing cancer biomarkers Prob

Control (left) and polyclonal antibody staining for anti-Neu5Gc (right) in a carcinoma cell line. Credit: courtesy of Nissi Varki, UCSD" />Control (left) and polyclonal antibody staining for anti-Neu5Gc (right) in a carcinoma cell line. Credit: courtesy of Nissi Varki, UCSD Researcher: Ajit Varki, distinguished professor of medicine and of cellular and molecular medicine, and co

A model of erythropoietin, which exists as a mixture of glycosylated variants. This glycoform contains three N-linked oligosaccharides (purple) and one O-linked glycan (pink). Glycans contribute to a large percentage of the overall mass and surface area of glycoproteins. Credit: courtesy of Robert Woods, UGA, Athens" />A model of erythropoietin, which exists as a mixture of glycosylated varia

A simple, quantitative method to identify glycans in plasma: Mass excess distribution of tryptic peptides is mapped as a function of monoisotopic mass. Red: highly populated areas; blue: unpopulated areas; black squares: mass excesses of glycans. Credit: courtesy of Michael Bereman, Taufika Williams, and David Muddiman, North Carolina State University" />A simple, quantitative method to identify glyc

The biological importance of glycoproteins has only partially translated into a wealth of detection reagents and kits. Commercial products are available, says UCSD's Ajit Varki, "But in general, the availability of reagents for the world of glycobiology is not as broad as standard molecular biology." Here are some basic off-the-shelf options: Related Articles Sweet Attachments Ph

How serving on a scientific advisory board can serve you well.

As biotech companies grow and shift their goals, the type of advice they need evolves as well. Here's a look at how the scientific advisory board of Steve Roth's company, Neose Technologies, changed to keep pace.