Cross-Sample Sequencing Contamination Galore

Scientists conducting a large-scale, comparative transcriptomics project have inadvertently highlighted widespread contamination in sequencing data.

Written byRuth Williams
| 3 min read

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FLICKR, SHAURY NASHSubcontracted nucleic acid sequencing can be a source of extensive cross-sample contamination, warn the authors of a report published in BMC Biology last week (March 29). Approximately 80 percent of RNA samples collected from 180 different species as part of an evolutionary study became tainted with RNA sequences from other species, according to the authors. And most of this contamination occurred when the samples were sent to companies for sequencing.

“The important take-home message is that all molecular biologists . . . need to consider contamination of research materials as a risk. None of us are immune to contamination, no matter how experienced we are or how good our technique. We need to be aware that our precious research materials may become contaminated, and think about ways to manage that risk,” Amanda Capes-Davis of CellBank Australia who was not involved with the research wrote in an email to The Scientist.

Study coauthor Marion Ballenghien was well aware of these risks. While working as a researcher in the lab of Nicolas Galtier at the Montpellier Institute of Evolutionary Sciences in France, Ballenghien was tasked with collecting and preparing hundreds of RNA samples from a variety of ...

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  • ruth williams

    Ruth is a freelance journalist. Before freelancing, Ruth was a news editor for the Journal of Cell Biology in New York and an assistant editor for Nature Reviews Neuroscience in London. Prior to that, she was a bona fide pipette-wielding, test tube–shaking, lab coat–shirking research scientist. She has a PhD in genetics from King’s College London, and was a postdoc in stem cell biology at Imperial College London. Today she lives and writes in Connecticut.

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