Extra DNA Base Discovered

An epigenetic variant of cytosine is stable in the genomes of living mice, suggesting a possible expansion of the DNA alphabet.

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FLICKR, MIKI YOSHIHITOAn epigenetic mark known as 5-formylcytosine (5fC) may be more than a transitory state that helps regulate gene expression. According to a study published yesterday (June 22) in Nature Chemical Biology, 5fC is stable in the mouse genome and may represent a fifth nucleotide in the DNA alphabet.

“It had been thought this modification was solely a short-lived intermediate, but the fact that we’ve demonstrated it can be stable in living tissue shows that it could regulate gene expression and potentially signal other events in cells,” coauthor Shankar Balasubramanian of the Cancer Research UK Cambridge Institute said in a press release.

While the function of the modified base—essentially a methylated cytosine with added oxygen—remains unclear, its position within the genome points to a role in gene expression. “This modification to DNA is found in very specific positions in the genome—the places which regulate genes,” lead author Martin Bachman, who conducted the research while at the University of Cambridge, said in the release. “In addition, it’s been found in every tissue in the body—albeit ...

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  • Jef Akst

    Jef Akst was managing editor of The Scientist, where she started as an intern in 2009 after receiving a master’s degree from Indiana University in April 2009 studying the mating behavior of seahorses.
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