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In-Depth Look at the Human Microbiome

Hundreds of samples from microbes living in the gut, skin, mouth, and vagina add to the human microbiome “fingerprint.” 

Written byJef Akst
| 2 min read

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Human microbiome dataFLICKR, MARTIN BEEKTracking 265 people’s various microbial communities, researchers have provided a wealth of data on microbiome variation across the body and over time. As part of the second phase of the Human Microbiome Project, the study, published today (September 20) in Nature, identified microbes—including viruses and fungi—present in more than 1,600 new samples from the gut, skin, mouth, and vagina, for a total of 2,355 samples from this population. The researchers also analyzed the microbes’ biochemical activity, which may influence human health.

“This study has given us the most detailed information to date about exactly which microbes and molecular processes help to maintain health in the human microbiome,” coauthor Curtis Huttenhower, a computational biologist at the Harvard T.H. Chan School of Public Health and the Broad Institute of Harvard and MIT, says in a press release.

Among the findings, the researchers found that the gut microbiome is highly personalized, with Bacteroides species in the gastrointestinal tract exhibiting strong inter-individual variation. In the vagina, too, the researchers saw consistent differences between individuals, both in terms of the species present and the biological pathways those species can perform. “Species abundances in the oral and skin microbiomes, meanwhile, exhibited greater time-varying dynamics and biological noise overall, and were less personalized,” ...

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Meet the Author

  • Jef (an unusual nickname for Jennifer) got her master’s degree from Indiana University in April 2009 studying the mating behavior of seahorses. After four years of diving off the Gulf Coast of Tampa and performing behavioral experiments at the Tennessee Aquarium in Chattanooga, she left research to pursue a career in science writing. As The Scientist's managing editor, Jef edited features and oversaw the production of the TS Digest and quarterly print magazine. In 2022, her feature on uterus transplantation earned first place in the trade category of the Awards for Excellence in Health Care Journalism. She is a member of the National Association of Science Writers.

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