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Modifying the Microbiome In Vivo, One Species or Gene at a Time

To manipulate the microbiome, researchers engineered a CRISPR delivery system that precisely targets bacteria in the mouse gut.

Written byNiki Spahich, PhD
| 4 min read
Researchers target E. coli in the mouse gut
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Over the past 25 years, researchers have learned a lot about our microbial companions and generated a mountain of data thanks to advances in sequencing technology. But researchers still lack effective methods to alter the microbiome based off of this information. Introducing new microbes via supplements or fecal transplants has shown little success because new bacterial residents have a hard time grabbing a foothold in a crowded, established community. Killing pathogens with antibiotics also takes benign bacteria as collateral damage, and can lead to drug resistance in survivors.

“There's a lack of precision in terms of how we are able to manipulate the microbiome,” said Peter Turnbaugh, associate professor at the University of California, San Francisco, whose research team recently developed a microbiome-altering system using CRISPR-Cas9 editing technology. “That really motivated this sort of search for a tool that we could use to make more specific changes.”

In vitro, scientists ...

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Meet the Author

  • Niki Spahich headshot

    Niki Spahich earned her PhD in genetics and genomics from Duke University, where she studied Haemophilus influenzae membrane proteins that contribute to respiratory infections. She later explored Staphylococcus aureus metabolism during her postdoctoral fellowship in the Department of Microbiology and Immunology at the University of North Carolina at Chapel Hill. Prior to joining The Scientist, Niki taught biology, microbiology, and genetics at various academic institutions. She also developed a passion for science communication in written, visual, and spoken forms, which led her to start Science Riot, a nonprofit dedicated to teaching scientists how to communicate to the public through the lens of comedy. Niki is currently the manager of The Scientist's Creative Services Team.

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