Microbes Shape Circadian Rhythms in the Mouse Gut

The diurnal cycles of the microbiome alter the activity of a protein produced by the host, and in turn guide histone acetylation, gene expression, and metabolic activity.

Written byKerry Grens
| 2 min read
circadian clock microbiome hdac3 histone deacetylation acetylation epigenetics gene expression metabolism fat lipid intestine gut

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Mice lacking their intestinal microbiota lose the rhythmic patterns in fat uptake that cycle diurnally in mice with their microbiomes intact, researchers reported today (September 26) in Science. The phenomenon is a consequence of the microbes’ influence on the host’s gene regulation. Microbes direct the activity of an enzyme called HDAC3 that in turn influences the activity of mouse genes important for metabolism and, ultimately, the absorption of fat, according to the study.

“Our finding that the intestinal microbiota programs the daily rhythmic expression of small intestine metabolic networks illuminates an essential role for the microbiota in regulating host metabolism and indicates that the microbiome, the circadian clock, and the mammalian metabolic system have tightly coevolved,” the authors write in their report.

Previous research had shown that the gut has a circadian clock, processing nutrients differently depending on the time of day. Researchers had also shown ...

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  • kerry grens

    Kerry served as The Scientist’s news director until 2021. Before joining The Scientist in 2013, she was a stringer for Reuters Health, the senior health and science reporter at WHYY in Philadelphia, and the health and science reporter at New Hampshire Public Radio. Kerry got her start in journalism as a AAAS Mass Media fellow at KUNC in Colorado. She has a master’s in biological sciences from Stanford University and a biology degree from Loyola University Chicago.

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