Week in Review, May 13–17

Reading pathogen epigenomes; a new stem cell; dealing with research misconduct; monkey fossils; exploratory mice grow new neurons; watching metamorphosis

Written byJef Akst
| 3 min read

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FLICKR, NATHAN READINGDevelopers of a relatively new sequencer realized the machine’s ability to detect methylation and other modifications to bacterial DNA based on a slight time delay in the synthesis of the new strand. Now, researchers are applying the technique broadly to differentiate closely related bacterial strains, to better understand variation among pathogens, and to understand the role of DNA modification in disease virulence and spread by mapping the epigenomes of emerging pathogens.

“It’s like you’ve been in a closed room for a long time, and you open the window and look out,” Nobel Laureate Richard Roberts, chief scientific officer at New England Biolabs, told The Scientist. “And there’s a whole lot of stuff out there, and you don’t know where to look.”

CELL/TACHIBANA ET AL.First there were human embryonic stem cells (hESCs), but they came with a suite of ethical concerns—namely, the need to destroy human embryos to obtain them. Then there were induced pluripotent stem cells (iPSCs), derived from adult cells that had been de-differentiated into a ESC-like state. Now, researchers have presented a third option: hESCs produced via nuclear transfer (NT-hESCs), or the transfer of the nucleus from an adult cell into a human egg whose nucleus has been removed. The new technique may avoid the genetic and epigenetic abnormalities of iPSCs, and could have implications for treating mitochondrial disease, as the nuclear transfer results in a cell with a new set of mitochondria.

WIKIMEDIA, SCHAAR HELMUTDespite more than 2 decades of widespread Responsible Conduct in Research (RCR) training programs for graduate students and postdocs, scientific misconduct is still on the rise. Clearly, it’s not working, argues James Hicks, a comparative and evolutionary physiologist at the University of California, Irvine. Meanwhile, Saint Louis University’s James DuBois and colleagues are looking to salvage the careers of those found guilty of misconduct. His REPAIR (Restoring Professionalism and Integrity in Research) program, which will host its second workshop this month, is “aimed at helping researchers make better professional decisions by anticipating consequences of actions and effectively managing stress, self-serving biases, compliance obligations, and challenges in the workplace.” But some researchers remain skeptical that the program will be successful, or that rule breakers deserve a second chance at all.

MAURICIO ANTONTwo new fossils uncovered in 25-million-year-old sediments provide clues regarding the split of apes, including humans, from Old World monkeys, such as baboons and macaques. That split is believed to have occurred between 25 and 30 million years ago, and previously the oldest fossils in these groups dated only to 20 million years ago. The new fossils—a molar belonging to the oldest known Old World monkey or cercopithecoid, and a jawbone and four teeth belonging to a new species—suggest that the split occurred when the climate was warming and the landscape was undergoing the beginnings of a drastic change that would form the Eastern African Rift from the formally flat Tanzanian plains. These changes could have resulted in new habitats and fueled primate diversification.

WIKIMEDIA, RAMAMore adventurous mice—that is, those that explored a complex environment more—grew more new neurons than their genetically identical counterparts, according to new research. The findings suggest that brain plasticity can be shaped by experience, which may influence the development of individuality.

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  • Jef (an unusual nickname for Jennifer) got her master’s degree from Indiana University in April 2009 studying the mating behavior of seahorses. After four years of diving off the Gulf Coast of Tampa and performing behavioral experiments at the Tennessee Aquarium in Chattanooga, she left research to pursue a career in science writing. As The Scientist's managing editor, Jef edited features and oversaw the production of the TS Digest and quarterly print magazine. In 2022, her feature on uterus transplantation earned first place in the trade category of the Awards for Excellence in Health Care Journalism. She is a member of the National Association of Science Writers.

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