Human Genetic Variation May Complicate CRISPR

Slight sequence differences confound target sites in precision genome-editing, a study shows.

Written byAshley Yeager
| 3 min read

Register for free to listen to this article
Listen with Speechify
0:00
3:00
Share

ISTOCK, RATSANALNatural differences in our DNA may cut into CRISPR’s ability to precision-edit the human genome, by thwarting Cas9’s ability to hit the right genetic target—or any target at all. An analysis of the extent of this problem, described today (July 31) in Nature Medicine, could have implications for how genome-editing technologies are tested in clinical trials and whether they could become broadly available.

“Precision editing technologies like CRISPR/Cas9 are incredibly promising as therapies,” geneticist Daniel MacArthur of the Broad Institute of Harvard and MIT tells The Scientist in an email. “They’re also exquisitely sensitive to the precise genetic changes present in a patient's genome.”

In 2014, researchers first started to see how genetic variation could disrupt CRISPR-Cas9 from reaching its targets. But to what extent such variation could confound the ability of the Cas9 enzyme to recognize its intended editing site wasn’t well understood.

In the new study, David Scott and Feng Zhang, both of MIT and the Broad Institute, analyzed data from the Exome Aggregation Consortium and the 1,000 Genomes database, projects that catalogue human genetic variation, and found that differences in DNA substantially impact the efficacy ...

Interested in reading more?

Become a Member of

The Scientist Logo
Receive full access to more than 35 years of archives, as well as TS Digest, digital editions of The Scientist, feature stories, and much more!
Already a member? Login Here

Related Topics

Meet the Author

  • Ashley started at The Scientist in 2018. Before joining the staff, she worked as a freelance editor and writer, a writer at the Simons Foundation, and a web producer at Science News, among other positions. She holds a bachelor’s degree in journalism from the University of Tennessee, Knoxville, and a master’s degree in science writing from MIT. Ashley edits the Scientist to Watch and Profile sections of the magazine and writes news, features, and other stories for both online and print.

    View Full Profile
Share
Illustration of a developing fetus surrounded by a clear fluid with a subtle yellow tinge, representing amniotic fluid.
January 2026, Issue 1

What Is the Amniotic Fluid Composed of?

The liquid world of fetal development provides a rich source of nutrition and protection tailored to meet the needs of the growing fetus.

View this Issue
Skip the Wait for Protein Stability Data with Aunty

Skip the Wait for Protein Stability Data with Aunty

Unchained Labs
Graphic of three DNA helices in various colors

An Automated DNA-to-Data Framework for Production-Scale Sequencing

illumina
Exploring Cellular Organization with Spatial Proteomics

Exploring Cellular Organization with Spatial Proteomics

Abstract illustration of spheres with multiple layers, representing endoderm, ectoderm, and mesoderm derived organoids

Organoid Origins and How to Grow Them

Thermo Fisher Logo

Products

nuclera logo

Nuclera eProtein Discovery System installed at leading Universities in Taiwan

Brandtech Logo

BRANDTECH Scientific Introduces the Transferpette® pro Micropipette: A New Twist on Comfort and Control

Biotium Logo

Biotium Launches GlycoLiner™ Cell Surface Glycoprotein Labeling Kits for Rapid and Selective Cell Surface Imaging

Colorful abstract spiral dot pattern on a black background

Thermo Scientific X and S Series General Purpose Centrifuges

Thermo Fisher Logo