Many Bacteria and Archaea Promoters Work Forward and Backward

New analyses find that divergent transcription, in which one promoter directs the expression of two adjacent genes oriented in opposite directions, is conserved across all domains of life.

head shot of jack j. lee in black and white
| 4 min read
streaks of white bacterial colonies on a blue Petri dish

Register for free to listen to this article
Listen with Speechify
0:00
4:00
Share

ABOVE: © ISTOCK.COM, SCHARVIK

Contrary to what’s typically described in biology textbooks, bacteria and archaea can have transcription proceed in opposite directions on the genome. This occurs thanks to bidirectional promoters—DNA sequences where RNA polymerases can hop on and travel one way or the other to produce mRNA transcripts. Such promoters aren’t rare occurrences: 19 percent of all transcription start sites (TSSs) in Escherichia coli are associated with a bidirectional promotor, according to a study published May 6 in Nature Microbiology.

“We were really surprised,” says study coauthor Emily Warman, a molecular microbiology postdoc at the University of Birmingham in the UK. While previous research had described bidirectional promoters in eukaryotes, as well as in a few bacteria and archaea species, the new study establishes divergent transcription—the reading of genes in both directions—as a widespread feature conserved across all three domains of life.

In eukaryotic cells, DNA winds around histone ...

Interested in reading more?

Become a Member of

The Scientist Logo
Receive full access to more than 35 years of archives, as well as TS Digest, digital editions of The Scientist, feature stories, and much more!
Already a member? Login Here

Keywords

Meet the Author

  • head shot of jack j. lee in black and white

    Jack J. Lee

    Jack is a science writer based in the San Francisco Bay Area. He has a bachelor’s degree in biology from Caltech and a PhD in molecular biology from Princeton University. He also completed a master’s in science communication at the University of California, Santa Cruz. In July 2021, he began a communications fellowship at the National Cancer Institute’s Division of Cancer Prevention. You can find more of his work at www.jackjleescience.com.

Share
A greyscale image of cells dividing.
March 2025, Issue 1

How Do Embryos Know How Fast to Develop

In mammals, intracellular clocks begin to tick within days of fertilization.

View this Issue
Discover the history, mechanics, and potential of PCR.

Become a PCR Pro

Integra Logo
Explore polypharmacology’s beneficial role in target-based drug discovery

Embracing Polypharmacology for Multipurpose Drug Targeting

Fortis Life Sciences
3D rendered cross section of influenza viruses, showing surface proteins on the outside and single stranded RNA inside the virus

Genetic Insights Break Infectious Pathogen Barriers

Thermo Fisher Logo
A photo of sample storage boxes in an ultra-low temperature freezer.

Navigating Cold Storage Solutions

PHCbi logo 

Products

BIOVECTRA

BIOVECTRA is Honored with 2025 CDMO Leadership Award for Biologics

Sino Logo

Gilead’s Capsid Revolution Meets Our Capsid Solutions: Sino Biological – Engineering the Tools to Outsmart HIV

Stirling Ultracold

Meet the Upright ULT Built for Faster Recovery - Stirling VAULT100™

Stirling Ultracold logo
Chemidoc

ChemiDoc Go Imaging System ​

Bio-Rad