Sequencing Cancer

This month’s AACR attendees, including National Cancer Institute Director Harold Varmus, discuss new approaches to cancer research using whole genome sequencing.

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ISTOCK, ALENGOIn a special lecture presented at the American Association for Cancer Research (AACR) meeting on Monday, April 8, National Cancer Institute (NCI) Director Harold Varmus discussed two new models of cancer research. The first, dubbed phenotype-to-genotype (P2G), capitalizes on the seemingly miraculous recoveries of a handful of patients in otherwise failed clinical trials. Known as “exceptional responders,” these patients show noticeable improvements—sometimes even complete remission—in response to a drug that did little or nothing for other patients in the trial. By sequencing the genomes of these exceptional responders, cancer researchers hope to gain clues regarding their unexpected recoveries that might help identify the subpopulations of patients for which the drug may prove most beneficial.

Jim Doroshow of the NCI’s Center for Cancer Research, elaborated on this approach, noting that the agency hopes to recruit at least 100 exceptional responders for study by institute researchers. These patients are “low-hanging fruit” for furthering drug development programs that may have been shuttered due to negative trial results, Doroshow said. “Can we look and find agents that were tried and discarded in the last 10 years, maybe even 20 years?”

NCI is also pursuing the opposite approach, known as genotype to phenotype (G2P), in which whole genome sequencing is used in large patient populations to improve the use of targeted cancer drugs and identify biomarkers of disease and drug response, Varmus described. In this light, the NCI hopes to screen as many as ...

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Meet the Author

  • Jef Akst

    Jef Akst was managing editor of The Scientist, where she started as an intern in 2009 after receiving a master’s degree from Indiana University in April 2009 studying the mating behavior of seahorses.
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